@TTR Any luck? I'm having the same issue. Leak entering the spare wheel well. I have a rubber boot floor which is dry on top so the ingress point into the boot itself (not necessarily the car) must be below the floor of the boot.
I have the old carpet normally in under the plastic floor. If I have both in, after rain, the carpet is wet, pooling in the wheel well and the carpet on the left and right that connects to the floor from the wall is wet.
Dried it today, held a hose over the roof for 2 mins at a time before checking, no leak annoyingly.
Tried to remove the plastic cover that sits on top of the half of the boot latch that attaches to the car, has two plastic clips within the boot attaching it which I got out, but I couldn't work out how to remove it (see bit circled in photo). Seems to be attached underneath somehow, did you manage to remove it?
Thinking my issue may be around there too, but really want to see it leaking so I can be sure