Hi
I can't be 100% certain, but I think calibrating a throttle body is only critical for a petrol engine where the TB determines the idle airflow and hence idle RPM. At idle the TB will be almost completely closed as the airflow is so small.
With a diesel, the airflow at idle is larger as the idle speed is controlled by the amount of fuel injected. The air to fuel ratio is a lot higher than with a petrol, as diesels are happy to operate in a "lean burn/excess air" condition whereas petrols will misfire or not run at all if too lean.
The diesel TB is used to control manifold pressure under cruise conditions to aid the EGR process (old school diesels had no TBs.) It should not affect idle speed unless it incorrectly closes completely, and chokes off nearly all the airflow (something it should only do when you switch off). You might be able to take off the large air feed hose and observe what the TB flap is doing, use a small mirror if necessary. To prove a point, I guess you could temporarily hold a pencil or similar in there to prevent it closing completely.