if the noise changes pitch with the car revs its either your earth point or the fact you have ur speaker cables next to your power lead. You need to put your power and remote lead on one side of the car, and the phono and speaker cables on the other.
For an earth point try using one of the bolts for the bumper in the boot. Give it a good sanding to get a good contact area.
If this does't work then it could be another earthing issue, such as I can get a whine if my amp casing touhes any other metalwork, such as the rear of the seats, or the wheel arches. make sure its not touching anything and im sure by doing all this your whine will be gone