It's not urgently required, as far as I know. The usual cause is that the battery has been allowed to go flat, or been disconnected for some time..
Basically, all of the car's control units use a common bus to communicate, but in order to do so without clashing with each other, they much be using a common timing cycle. A proxy alignment procedure basically tells them all: 'listen, I'm going to tell you when you can talk, and when you can't'..