Stocky,
the way the linkage works I would expect that you should at least be able to select first, third and neutral or second, fourth and neutral. I think it odd that for it to be in gear (you note 4th) but not be able to select the even pair of 2nd.
If you know the gearbox internals are OK then lets keep it simple. Have a look at my dodgy photo. The rusty 'lump' on the RHS is the gear lever housing. My blue tipped pencil is pointing to where the short shaft from this housing joins onto the long shaft that runs back through the tunnel and exits under the car. After that, is the rubber link that you have relpaced and then the selector shaft that sticks out of the front of the box.
I can't help thinking that:
The rear rubber link has come adrift.
The bolt that joins the short shaft from the gear lever housing to the long shaft that runs through the tunnel has let go.
The bolts that hold the gear lever housing to the right side of the transmission tunnel are loose. This is my first thought. (You can see the 2 mounting holes in my photo.)
We know you replaced the rubber link, did you loosen any of the other parts of the linkage?
If all of these are OK then we have to look further. Let us know whow you get on.
Regards
Joe R